| Tracklisting |
| CD 1 |
| 1. | Prologue [0:58] |
| 2. | Main Title/Major Mayhem [4:07] |
| 3. | Hologram Gags/You'll Do [1:05] |
| 4. | Meet Dr. Smith [1:40] |
| 5. | Dog Tags, No. 1 [0:38] |
| 6. | Reprogram the Robot/The Launch [6:25] |
| 7. | Bad Dream/The Robot Attack [3:22] |
| 8. | Where's Judy?/Judy Is Dying [6:23] |
| 9. | Can't Kill the Man [0:49] |
| 10. | We're Lost [0:23] |
| 11. | The Proteus Alternate [2:23] |
| 12. | Boarding the Proteus, Pt. 1/BoardingThe Proteus, Pt. 2 [7:01] |
| 13. | Spiders and Static/Spiders Attack [7:54] |
| 14. | Jupiter Crash [1:11] |
| 15. | A Strange New Place/Spider Scratch [1:29] |
| 16. | Matt and Judy [1:40] |
| 17. | Goodnights [0:38] |
| 18. | Energy Bubbles/Dog Tags, No. 2/John and West Set Out [2:23] |
| 19. | Will's Walk/Smith Persuades Will [1:56] |
| 20. | Will and Smith Set Out [1:59] |
| 21. | Decades Old/I'm Your Son/Time Machine [4:27] |
| CD 2 |
| 1. | Never Trust Anyone/Smith Interrupts/Spider Smith [3:01] |
| 2. | Friendship/We Have a Plan/Kill the Monster [8:46] |
| 3. | Let's Go Major [1:26] |
| 4. | The Portal [2:44] |
| 5. | Through the Planet [2:28] |
| 6. | Nice Work Fly Boy [1:36] |
| 7. | Fanfare for Will [0:27] |
| 8. | Lost in Space [3:26] |
| 9. | Hologram Gags/You'll Do [1:04] |
| 10. | Can't Kill the Man [0:49] |
| 11. | The Proteus [2:24] |
| 12. | Spiders and Static/Spiders Attack [7:54] |
| 13. | Decades Old/I'm Your Son/Time Machine [4:32] |
| 14. | Friendship/We Have a Plan/Kill the Monster [8:50] |
| 15. | Let's Go Major [1:24] |
| 16. | The Portal [2:42] |
| 17. | The Portal [2:43] |
| 18. | Through the Planet [3:13] |
| 19. | Through the Planet [2:41] |
| 20. | Nice Work Fly Boy [1:48] |