My plan is to just reburn the CD to a CDR so it can be a skip free score. However Shadow of the Empire is an Enhanced CD, and I want to burn the CDR just like the original CD. The original CD seems to have only one session that contains both audio tracks and data, resulting in only having the 10 audio tracks show up in a CD player and only the data track showing up in a computer CD drive.
But I can't figure out how it was burned like that. The closet I can get is to have two sessions one with the audio and the other with data, resulting in having an extra track show up in the CD player that contains the data.

Can someone explain how to burn the CDR exactly like the original CD? I already know the easiest way is to make and image of the original CD, and burn it. But in this case I can't because I had to extract the audio in to wave files first so the errors in them could be corrected.

Sorry, I'm just calling Marian! He will be able to help you, he knows all about CDRs, DVDs, computers...

Marian? Marian?? MARIAN??? MARIAN???????

First, you will have to move all of the files from the enhanced section of the CD to a folder on the hard drive.

Start a new CD project choosing CD Extra as the choice. This will open two windows on the left hand side of the screen.

The top window is where the data files are placed. Be sure to set the label name to match the original label of the Shadow of the Empire CD. (You can find this name by opening up My Computer and checking out the drive that has your original. That name is the correct one to use for your new label as well. (Don’t worry about the two red folders that automatically appear, you can’t delete them and they won’t cause you any trouble.

The bottom window should contain your extracted .wav files.

Place them in the window and select all tracks but the first one. Right click on the selected tracks and choose properties. One of the things you can change here is the number of seconds between tracks. Set “pause” to 0 seconds and press “OK”. This will remove any annoying pauses between tracks that should not have a pause. (Don’t worry about loosing any gaps that should be there. Intentional gaps are already part of the wav.)

You should now be ready to burn.

Once you’ve burned the CD, place it in your regular CD-Rom drive and let the autoplay start. Make sure that everything works. Also, make sure that the audio is fine. It doesn’t happen often, but even the best burners and software can create coasters.

"Can't open audio source"

It's always the first track on the particular CD and the whole process stops. It's always the same 2 or 3 mp3s. I've tried re-ripping them from the CD in case they were faulty, but to no avail.

I just burned a Thomas Crown CD enhanced that used the above method.

Taken from the Nero Help files:

A CD EXTRA contains two sessions: the first session contains audio information. Existing normal CD audio players will playback this first session as a CD audio disc. The second session contains data files with content related to the audio track in the first session. The data files in general will contain items like disc and track titles, lyrics and background information on the music. This information is stored in special files. The second session will only be used by computer systems equipped with a CD-ROM drive.

It does not play the last track. As I said I just created an enhanced Thomas Crown Affair(1968) CD.

I popped it into my CD player and played the CD. It stopped after the last music track. I put it in my CD-ROM Drive and accessed the data files on the CD.

This does work.

Here is a download page for Nero that includes a PDF file that goes into further detail about this format and the Nero burning program.
http://www.nero.com/en/download.htm

I am not sure exactly what the problem is, but my guess is you are trying to copy CD on the fly. Sometimes regular CD-Rom’s don’t extract audio correctly. Sometimes they aren’t able to clearly read the tracks. In addition, on-the-fly can be tricky. Unless your burner and software support Burnproof, On-the Fly can really make some coasters.

Try this:

Put the offending CD into your burner and extract all the tracks as .wav files and then burn the CD Disc at Once. CD burners are much more discerning than regular CD-Roms and can often read damaged CD’s.

If that doesn’t work, try reading the CD in other drives, perhaps at a Local store to determine if that is the problem. Does it play in a regular CD Player?